CALRWPLUS

calRW+


Synopsis

Orientation-dependent atomic potential for protein structure modeling and structure decoy recognition.

Description

RWplus is orientation-dependent atomic potential for protein structure modeling and structure decoy recognition. It is calculated from 1,383 high-resolution PDB structures using an ideal random-walk chain as the reference state. The RW potential has been extensively optimized and tested on a variety of protein structure decoy sets and demonstrates a significant power in protein structure recognition and a strong correlation with the RMSD of decoys to the native structures.

URL

http://zhanglab.ccmb.med.umich.edu/RW/

Versions

NMRbox Version Software Version
1.0.0 1.0,
2.0.0 1.0,
3.0.0 1.0,

Keywords

  • Molecular Modeling

Citations

A novel side-chain orientation dependent potential derived from random-walk reference state for protein fold selection and structure prediction
Zhang Jian, Zhang Yang,
PloS one. 2010; 5(10): e15386